PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000272980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 416aa    MW: 46654.7 Da    PI: 9.2147
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000272980genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.33.2e-431663122131
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesss 79 
                     gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd LGfdk+sktieWL++++k aik+l +                   +            +
  MDP0000272980 166 SGKKDRHSKIYTAQGPRDRRMRLSVQIARKFFDLQDTLGFDKASKTIEWLFTKSKSAIKDLKQHllvspkedynstnggataK------------V 249
                    69**************************************************************9988766655444433221............2 PP

            TCP  80 ssasnsssg..........kaaksaa.kskksqksaasalnlakesrakarararertrekmr 131
                    +s++n + +          + a+ +   +  ++k++ +   +a+esr +arararertrekm+
  MDP0000272980 250 NSSENTTGEvasrimepssSDANGDIsVGFGREKRNRKLCVVARESRVEARARARERTREKMM 312
                    22221111133444555433344444244455555555677788*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-40167312IPR005333Transcription factor, TCP
PROSITE profilePS5136936.285168226IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.048293310IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MVSSSSTTSN FQLPFLCDDN QTNAIIDDFH QNPNSILSHG GHHQYYSQYY YSEDQQQQAP  60
EFLEHDGMLL SYLLSQQQLL LGXXSTTTNV ATDYNPTRAH ESTEISIAAS NSNKAMEVIH  120
RDXEDGRNEL TINTAAASKI KINNVKINGG GGGGEKKANV ARKRASGKKD RHSKIYTAQG  180
PRDRRMRLSV QIARKFFDLQ DTLGFDKASK TIEWLFTKSK SAIKDLKQHL LVSPKEDYNS  240
TNGGATAKVN SSENTTGEVA SRIMEPSSSD ANGDISVGFG REKRNRKLCV VARESRVEAR  300
ARARERTREK MMRIRGFDQD HQHLTKQSPK HQEQQNPNEL FETAGMMNST MMSTNCRNXG  360
QKIVGRTSSG CGGAQRSLLN FDFWRHVSEA SGANSEDCGF SRELGSNQLH QEYYYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008352929.10.0PREDICTED: uncharacterized protein LOC103416466
TrEMBLM5Y1088e-71M5Y108_PRUPE; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-30TCP domain protein 12